2024 Parallel subgenome common carp

Parallel subgenome common carp

Author: rpya

August undefined, 2024

WebMar 18, 2024 · The allo-tetraploid common carp, one widely cultured food fish, is able to produce poly-unsaturated fatty acids (PUFAs). The genetic markers on the PUFA contents for breeding was limited. The polymorphisms in elovl5a and elovl5b, the rate-limiting enzymes in the PUFA biosynthesis, have not been investigated yet. WebSep 30, 2024 · In the present study, we report an improved genome assembly of allo-tetraploid common carp, an updated genome annotation of allo-tetraploid goldfish and the chromosome-scale assemblies of a progenitor-like diploid Puntius tetrazona and an outgroup diploid Paracanthobrama guichenoti.

Parallel subgenome structure and divergent expression evolution …

WebMay 27, 2024 · The ancient WGD within Cyprininae was identified via phylogenetic analyses of genome-wide markers, which integrated subgenomes M and P. Analyses compared both subgenomes of goldfish, common carp, and golden-line barbel ( Sinocyclocheilus grahami) to zebrafish and grass carp. my laptop battery flickers

The allotetraploid origin and asymmetrical genome evolution of common carp

WebOct 11, 2024 · Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole genome duplication and provides a model to study polyploid genome … WebSep 1, 2024 · Parallel subgenome structure evolution in the allo-tetraploids was featured with equivalent chromosome components, higher protein identities, similar transposon divergence and contents, homoeologous exchanges, better synteny level, strong sequence compensation and symmetric purifying selection. WebSix pSNPs associated with the contents of PUFAs in common carp were identified, including one elovl5a pSNP, one elvl5b p SNP, and four fads2b pSNPS, which were predicted in the locations of transcriptional factor binding sites. The allo-tetraploid common carp encodes two duplicated fads2 genes (fads2a and fads2b) and two duplicated elovl5 … my laptop battery charge indicator

Biology Free Full-Text Association Analysis between Genetic …

FAO: Common carp home - Food and Agriculture Organization

WebSep 22, 2024 · To determine the genetic background of the allotetraploid lineage of goldfish (♀) and common carp (♂), we identified 100 chromosomes in the intergeneric F 1 and 200 chromosomes in the allotetraploid F 22 and F 24 based on metaphase chromosome assays of cultured kidney cells. WebOct 1, 2024 · Parallel subgenome structure evolution in the allo-tetraploids was featured with equivalent chromosome components, higher protein identities, similar transposon … my laptop battery is draining too fastWebThe common carp, P. guichenoti and P. tetrazona genomes con - tained 47,924, 24,284 and 21,943 protein-coding genes, respectively. Among them, at least 90.1% and 99.3% … my laptop battery only charges to 75

"WebAsymmetric subgenome evolution has been observed in domesticated plants 15,16,19,20 , African clawed frog (Xenopus laevis) 18 , and common carp (Cyprinus carpio) 21, 22 . ... Single-cell... " - Parallel subgenome common carp

Parallel subgenome common carp

WebDec 29, 2024 · Common carp ( Cyprinus carpio ) is an allotetraploid Cyprinid species derived from recent whole genome duplication and provides an excellent model system for studying polyploid genome evolution in vertebrates. To explore the origins and consequences of tetraploidy in C. carpio , we generated three chromosome-level new … WebDec 1, 2024 · Common carp (Cyprinus carpio), with the characteristics of strong adaptability, excellent reproductive ability, and rich nutritional value, has been reared in Asia for more than 2 000 years...

Did you know?

WebSep 30, 2024 · We found evidence for parallel subgenome structure evolution and versatile expression divergence processes in these tetraploids. Resequencing 93 individuals uncovered the geographical genome... WebSep 30, 2024 · In the present study, we report an improved genome assembly of allo-tetraploid common carp, an updated genome annotation of allo-tetraploid goldfish and …

WebGoldfish (Carassius auratus) were domesticated in ancient China from crucian carp (both are still considered the same species) (1–3), which is one of the most important farmed fish, with global aquaculture production of 3.096 million tons of crucian carp in 2024 ().The appearance of red scales on normally gray or silver crucian carp was first recorded … WebParallel subgenome structure evolution in the allo-tetraploids was featured with equivalent chromosome components, higher protein identities, similar transposon divergence and contents, homoeologous exchanges, better synteny level, strong sequence compensation and symmetric purifying selection. ... Parallel subgenome structure and divergent ...

WebParallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish. Nature Genetics 2024-10-30 ... (BMP4) expressions in muscles of tilapia and common carp indicate that BMP4 plays a role in the intermuscular bone distribution in a dose-dependent manner. Gene Expression Patterns 2024 Journal article WebMar 18, 2024 · The species-specific whole genome duplication and parallel subgenome evolution in common carp generated two homoeologues of fads2 (fads2a and fads2b) …

WebOct 11, 2024 · Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole genome duplication and provides a model to study polyploid genome evolution in vertebrates.Here, we generate three chromosome-level reference genomes of C. carpio and compare to related diploid Cyprinid genomes. We identify a Barbinae lineage as …

WebParallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish Published in: Nature Genetics, September 2024 DOI: 10.1038/s41588-021-00933-9: Authors: my laptop battery icon not showingWebJun 8, 2024 · Such questions can be tested by comparing molecular mechanisms of subgenome dominance in diverse lineages, including animals (Braasch & Postlethwait, 2012; Session et al., 2016; McElroy et al., 2024; Li et al., 2024). A fascinating question that remains to be answered is whether a parallel mechanism of subgenome dominance … my laptop battery drains too fastWebOct 11, 2024 · Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole genome duplication and provides a model to study polyploid genome … my laptop battery dies fast how can i fix itWebDec 4, 2024 · The common carp is a representative polyploidy species of the Cyprininae, which includes diploids, tetraploids, and higher polyploids. The common carp is widely … my laptop became slow all of a suddenWebNov 24, 2024 · Common carp, a world-wide cultured species, underwent a very recent allo-tetraploidization event and performed parallel subgenome evolution with divergent expression processes [ 12 ]. This allo-tetraploid genome has a slow gene loss rate and encodes almost twice gene numbers compared with the diploid fish. my laptop battery keeps dyingWebParallel subgenome structure evolution in the allo-tetraploids was featured with equivalent chromosome components, higher protein identities, similar transposon divergence and … my laptop battery is swollenWebAquaculture production of common carp increases parallel to the increase of global aquaculture production of freshwater fishes. According to FAO (FIGIS, 2013), production of freshwater fishes was 31 839 573 tonnes in 2005, and increased to 45 335 385 tonnes by 2011 (an increase of more than 42 percent). During these years, the contribution of ... my laptop battery is dead